• Chinese Core Journal
  • Chinese Science Citation Database (CSCD) Source journal
  • Journal of Citation Report of Chinese S&T Journals (Core Edition)
XIE Wenhao, LI Chengzhang, YU Yu. Study of Arabidopsis H3K27 methyltransferase CLF responding to ambient temperature and involving in temperature morphogenesis[J]. Journal of South China Agricultural University, 2023, 44(5): 818-826. DOI: 10.7671/j.issn.1001-411X.202303031
Citation: XIE Wenhao, LI Chengzhang, YU Yu. Study of Arabidopsis H3K27 methyltransferase CLF responding to ambient temperature and involving in temperature morphogenesis[J]. Journal of South China Agricultural University, 2023, 44(5): 818-826. DOI: 10.7671/j.issn.1001-411X.202303031

Study of Arabidopsis H3K27 methyltransferase CLF responding to ambient temperature and involving in temperature morphogenesis

More Information
  • Received Date: March 29, 2023
  • Available Online: November 12, 2023
  • Published Date: August 10, 2023
  • Objective 

    To explore the role of Arabidopsis H3K27 methyltransferase CURLY LEAF (CLF) in temperature morphogenesis.

    Method 

    The differentially expressed genes were screened by phenotypic analysis and transcriptome analysis of Arabidopsis wild type Col-0 and mutant clf-29 under different temperatures of 22 and 16 ℃.

    Result 

    clf-29 showed significant phenotypic differences under different temperatures, there was less difference between clf-29 and Col-0 at 16 ℃ than at 22 ℃. Transcriptome analysis found that deletion of CLF led to expression changes of a large number of genes, which were divided into four types (significantly up-regulated/down-regulated only in Col-0, significantly up-regulated/down-regulated only in clf-29 mutant), containing 96 temperature responsive genes.

    Conclusion 

    Arabidopsis epigenetic regulator CLF responds to ambient temperature and is involved in temperature morphogenesis.

  • [1]
    CHANG Y N, ZHU C, JIANG J, et al. Epigenetic regulation in plant abiotic stress responses[J]. Journal of Integrative Plant Biology, 2020, 62(5): 563-580. doi: 10.1111/jipb.12901
    [2]
    LAMERS J, VAN DER MEER T, TESTERINK C. How plants sense and respond to stressful environments[J]. Plant Physiology, 2020, 182(4): 1624-1635. doi: 10.1104/pp.19.01464
    [3]
    ASHAPKIN V V, KUTUEVA L I, ALEKSANDRUSHKINA N I, et al. Epigenetic mechanisms of plant adaptation to biotic and abiotic stresses[J]. International Journal of Molecular Sciences, 2020, 21(20): 7457. doi: 10.3390/ijms21207457.
    [4]
    GALLUSCI P, DAI Z, GENARD M, et al. Epigenetics for plant improvement: Current knowledge and modeling avenues[J]. Trends in Plant Science, 2017, 22(7): 610-623. doi: 10.1016/j.tplants.2017.04.009
    [5]
    KASSIS J A, KENNISON J A, TAMKUN J W. Polycomb and trithorax group genes in Drosophila[J]. Genetics, 2017, 206(4): 1699-1725. doi: 10.1534/genetics.115.185116
    [6]
    LEWIS E B. A gene complex controlling segmentation in Drosophila[J]. Nature, 1978, 276(5688): 565-570. doi: 10.1038/276565a0
    [7]
    SCHUETTENGRUBER B, GANAPATHI M, LEBLANC B, et al. Functional anatomy of Polycomb and trithorax chromatin landscapes in Drosophila embryos[J]. PLoS Biology, 2009, 7(1): 146-163.
    [8]
    SPARMANN A, VAN LOHUIZEN M. Polycomb silencers control cell fate, development and cancer[J]. Nature Reviews Cancer, 2006, 6(11): 846-856. doi: 10.1038/nrc1991
    [9]
    PIEN S, GROSSNIKLAUS U. Polycomb group and trithorax group proteins in Arabidopsis[J]. Biochimica et Biophysica Acta: Gene Structure and Expression, 2007, 1769(5/6): 375-382.
    [10]
    GOODRICH J, PUANGSOMLEE P, MARTIN M, et al. A Polycomb-group gene regulates homeotic gene expression in Arabidopsis[J]. Nature, 1997, 386(6620): 44-51. doi: 10.1038/386044a0
    [11]
    GROSSNIKLAUS U, VIELLE-CALZADA J P, HOEPPNER M A, et al. Maternal control of embryogenesis by MEDEA, a Polycomb group gene in Arabidopsis[J]. Science, 1998, 280(5362): 446-450. doi: 10.1126/science.280.5362.446
    [12]
    CHANVIVATTANA Y, BISHOPP A, SCHUBERT D, et al. Interaction of Polycomb-group proteins controlling flowering in Arabidopsis[J]. Development, 2004, 131(21): 5263-5276. doi: 10.1242/dev.01400
    [13]
    XIAO J, WAGNER D. Polycomb repression in the regulation of growth and development in Arabidopsis[J]. Current Opinion in Plant Biology, 2015, 23: 15-24. doi: 10.1016/j.pbi.2014.10.003
    [14]
    SHU J, CHEN C, THAPA R K, et al. Genome-wide occupancy of histone H3K27 methyltransferases CURLY LEAF and SWINGER in Arabidopsis seedlings[J]. Plant Direct, 2019, 3(1): 100. doi: 10.1002/pld3.100.
    [15]
    KIM G T, TSUKAYA H, UCHIMIYA H. The CURLY LEAF gene controls both division and elongation of cells during the expansion of the leaf blade in Arabidopsis thaliana[J]. Planta, 1998, 206(2): 175-183. doi: 10.1007/s004250050389
    [16]
    LAFOS M, KROLL P, HOHENSTATT M L, et al. Dynamic regulation of H3K27 trimethylation during Arabidopsis differentiation[J]. PLoS Genetics, 2011, 7(4): e1002040. doi: 10.1371/journal.pgen.1002040
    [17]
    LIU J, DENG S, WANG H, et al. CURLY LEAF regulates gene sets coordinating seed size and lipid biosynthesis[J]. Plant Physiology, 2016, 171(1): 424-436. doi: 10.1104/pp.15.01335
    [18]
    GU X, XU T, HE Y. A histone H3 lysine-27 methyltransferase complex represses lateral root formation in Arabidopsis thaliana[J]. Molecular Plant, 2014, 7(6): 977-988. doi: 10.1093/mp/ssu035
    [19]
    DING Y, SHI Y, YANG S. Molecular regulation of plant responses to environmental temperatures[J]. Molecular Plant, 2020, 13(4): 544-564. doi: 10.1016/j.molp.2020.02.004
    [20]
    KUMAR S V, WIGGE P A. H2A.Z-containing nucleosomes mediate the thermosensory response in Arabidopsis[J]. Cell, 2010, 140(1): 136-147. doi: 10.1016/j.cell.2009.11.006
    [21]
    GIL K E, PARK C M. Thermal adaptation and plasticity of the plant circadian clock[J]. New Phytologist, 2019, 221(3): 1215-1229. doi: 10.1111/nph.15518
    [22]
    QUINT M, DELKER C, FRANKLIN K A, et al. Molecular and genetic control of plant thermomorphogenesis[J]. Nature Plants, 2016, 2(1): 15190. doi: 10.1038/NPLANTS.2015.190.
    [23]
    BLAZQUEZ M A, AHN J H, WEIGEL D. A thermosensory pathway controlling flowering time in Arabidopsis thaliana[J]. Nature Genetics, 2003, 33(2): 168-171. doi: 10.1038/ng1085
    [24]
    MARTIN M. Cutadapt removes adapter sequences from high-throughput sequencing reads[J]. EMBnet Journal, 2011, 17(1): 10-12. doi: 10.14806/ej.17.1.200
    [25]
    KIM D, LANGMEAD B, SALZBERG S L. HISAT: A fast spliced aligner with low memory requirements[J]. Nature Methods, 2015, 12(4): 357-360. doi: 10.1038/nmeth.3317
    [26]
    LI H, HANDSAKER B, WYSOKER A, et al. The sequence alignment/map format and SAMtools[J]. Bioinformatics, 2009, 25(16): 2078-2079. doi: 10.1093/bioinformatics/btp352
    [27]
    LIAO Y, SMYTH G K, SHI W. FeatureCounts: An efficient general purpose program for assigning sequence reads to genomic features[J]. Bioinformatics, 2014, 30(7): 923-930. doi: 10.1093/bioinformatics/btt656
    [28]
    LOVE M I, HUBER W, ANDERS S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2[J]. Genome Biology, 2014, 15(12): 550. doi: 10.1186/s13059-014-0550-8.
    [29]
    RAMIREZ F, RYAN D P, GRUNING B, et al. DeepTools2: A next generation web server for deep-sequencing data analysis[J]. Nucleic Acids Research, 2016, 44(W1): W160-W165. doi: 10.1093/nar/gkw257
    [30]
    THORVALDSDOTTIR H, ROBINSON J T, MESIROV J P. Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration[J]. Briefings in Bioinformatics, 2013, 14(2): 178-192. doi: 10.1093/bib/bbs017
    [31]
    YU G, WANG L G, HAN Y, et al. ClusterProfiler: An R package for comparing biological themes among gene clusters[J]. OMICS: A Journal of Integrative Biology, 2012, 16(5): 284-287. doi: 10.1089/omi.2011.0118
    [32]
    JUNG C G, HWANG S G, PARK Y C, et al. Molecular characterization of the cold- and heat-induced Arabidopsis PXL1 gene and its potential role in transduction pathways under temperature fluctuations[J]. Journal of Plant Physiology, 2015, 176: 138-146. doi: 10.1016/j.jplph.2015.01.001
    [33]
    CHEN T, CHEN J H, ZHANG W, et al. BYPASS1-LIKE, a DUF793 family protein, participates in freezing tolerance via the CBF pathway in Arabidopsis[J]. Frontiers in Plant Science, 2019, 10: 807. doi: 10.3389/fpls.2019.00807.
    [34]
    BOUREAU L, HOW-KIT A, TEYSSIER E, et al. A CURLY LEAF homologue controls both vegetative and reproductive development of tomato plants[J]. Plant Molecular Biology, 2016, 90(4/5): 485-501.
    [35]
    LUO M, PLATTEN D, CHAUDHURY A, et al. Expression, imprinting, and evolution of rice homologs of the polycomb group genes[J]. Molecular Plant, 2009, 2(4): 711-723. doi: 10.1093/mp/ssp036
    [36]
    KWON C S, LEE D, CHOI G, et al. Histone occupancy-dependent and -independent removal of H3K27 trimethylation at cold-responsive genes in Arabidopsis[J]. Plant Journal, 2009, 60(1): 112-121. doi: 10.1111/j.1365-313X.2009.03938.x
    [37]
    RAMAKRISHNAN M, ZHANG Z, MULLASSERI S, et al. Epigenetic stress memory: A new approach to study cold and heat stress responses in plants[J]. Frontiers in Plant Science, 2022, 13: 1075279. doi: 10.3389/fpls.2022.1075279.
    [38]
    TIAN Y, ZHENG H, ZHANG F, et al. PRC2 recruitment and H3K27me3 deposition at FLC require FCA binding of COOLAIR[J]. Science Advances, 2019, 5(4): eaau7246. doi: 10.1126/sciadv.aau7246
    [39]
    YANG H, BERRY S, OLSSON T S G, et al. Distinct phases of Polycomb silencing to hold epigenetic memory of cold in Arabidopsis[J]. Science, 2017, 357(6356): 1142-1145. doi: 10.1126/science.aan1121
  • Cited by

    Periodical cited type(1)

    1. 周光亮,许源峰,杨慧,李新云,赵云翔,刘向东. 全产业链猪育种体系构建的研究进展. 中国猪业. 2024(03): 59-67 .

    Other cited types(0)

Catalog

    Article views (138) PDF downloads (24) Cited by(1)

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return