Identification and genetic evolution analysis of astrovirus RdRpgene of Alopexlagopus

JI Jinzhao; HUANG Mian; LU Gang; OU Jiajun; PENG Shiming; SA Jiaqi; LI Shoujun

doi:10.7671/j.issn.1001-411X.202003031

Journal of South China Agricultural University > 2021 > 42(1): 12-16. > DOI: 10.7671/j.issn.1001-411X.202003031

JI Jinzhao, HUANG Mian, LU Gang, et al. Identification and genetic evolution analysis of astrovirus RdRpgene of Alopexlagopus[J]. Journal of South China Agricultural University, 2021, 42(1): 12-16. DOI: 10.7671/j.issn.1001-411X.202003031

Citation:

PDF (738 KB)

Identification and genetic evolution analysis of astrovirus RdRpgene of Alopexlagopus

1.
College of Veterinary Medicine, South China Agricultural University/Guangdong Provincial Key Laboratory of Prevention and Control for Severe Clinical Animal Diseases, Guangzhou 510642, China
2.
Guangzhou Zoo, Guangzhou 510070, China

More Information

Received Date: February 19, 2020
Available Online: May 17, 2023

Graphical Abstract

Abstract

Abstract

Objective
To investigate the genetic variation of astrovirus identified in the kidney of a dead Alopex lagopus in Guangzhou Zoo.

Method
The autopsy was performed on the dead A. lagopus, and the etiology detection of the internal organs was determined by semi-nested RT-PCR. The amplified RdRp gene sequence of the virus strain was used for similarity analysis.

Result
The kidney of the dead A. lagopus were pale, enlarged and the capsule was difficult to be stripped off. The astrovirus RdRp gene in kidney showed positive. The astrovirus RdRp gene had nucleotide similarities of 67.5%−96.2% with nine referenced astrovirus strains from other animals, and was most closely related to the feline astrovirus 2 strain 1637F isolated in Hong Kong (96.2% similarity).

Conclusion
The study enlarges the knowledge of the interspecies transmission of astrovirus among wild mammals, also proves the possibility of extraintestinal infection caused by astrovirus.
- Alopex lagopus,
- astrovirus,
- kidney,
- wild mammal,
- RdRp gene

FullText(HTML)

References (21)

References

[1]	APPLETON H, HIGGINS P G. Letter: Viruses and gastroenteritis in infants[J]. Lancet, 1975, 1(7919): 1297.
[2]	BOSCH A, PINTO R M, GUIX S. Human astroviruses[J]. Clinical Microbiology Reviews, 2014, 27(4): 1048-1074. doi: 10.1128/CMR.00013-14
[3]	PANTIN-JACKWOOD M J, STROTHER K O, MUNDT E, et al. Molecular characterization of avian astroviruses[J]. Archives of Virology, 2011, 156(2): 235-244. doi: 10.1007/s00705-010-0849-z
[4]	REUTER G, PANKOVICS P, BOROS A. Nonsuppurative (aseptic) meningoencephalomyelitis associated with neurovirulent astrovirus infections in humans and animals[J]. Clinical Microbiology Reviews, 2018, 31(4): e00040-18. doi: 10.1128/CMR.00040-18.
[5]	WU W, XU R, LV Y, et al. Goose astrovirus infection affects uric acid production and excretion in goslings[J]. Poultry Science, 2020, 99(4): 1967-1974. doi: 10.1016/j.psj.2019.11.064
[6]	ARRUDA B, ARRUDA P, HENSCH M, et al. Porcine astrovirus type 3 in central nervous system of swine with polioencephalomyelitis[J]. Emerging Infectious Diseases, 2017, 23(12): 2097-2100. doi: 10.3201/eid2312.170703
[7]	XIAO C T, LUO Z, LV S L, et al. Identification and characterization of multiple porcine astrovirus genotypes in Hunan province, China[J]. Archives of Virology, 2017, 162(4): 943-952. doi: 10.1007/s00705-016-3185-0
[8]	VU D L, CORDEY S, BRITO F, et al. Novel human astroviruses: Novel human diseases?[J]. Journal of Clinical Virology, 2016, 82: 56-63. doi: 10.1016/j.jcv.2016.07.004
[9]	NAGAI M, OMATSU T, AOKI H, et al. Full genome analysis of bovine astrovirus from fecal samples of cattle in Japan: Identification of possible interspecies transmission of bovine astrovirus[J]. Archives of Virology, 2015, 160(10): 2491-2501. doi: 10.1007/s00705-015-2543-7
[10]	DE BENEDICTIS P, SCHULTZ-CHERRY S, BURNHAM A, et al. Astrovirus infections in humans and animals: Molecular biology, genetic diversity, and interspecies transmissions[J]. Infection Genetics and Evolution, 2011, 11(7): 1529-1544. doi: 10.1016/j.meegid.2011.07.024
[11]	QUAN P L, WAGNER T A, BRIESE T, et al. Astrovirus encephalitis in boy with X-linked agammaglobulinemia[J]. Emerging Infectious Diseases, 2010, 16(6): 918-925. doi: 10.3201/eid1606.091536
[12]	WANG L, SHEN H, ZHENG Y, et al. Astrovirus in white-tailed deer, United States, 2018[J]. Emerging Infectious Diseases, 2020, 26(2): 374-376. doi: 10.3201/eid2602.190878
[13]	MENDENHALL I H, SMITH G J D, VIJAYKRISHNA D. Ecological drivers of virus evolution: Astrovirus as a case study[J]. Journal of Virology, 2015, 89(14): 6978-6981. doi: 10.1128/JVI.02971-14
[14]	MOSER L A, SCHULTZ-CHERRY S. Pathogenesis of astrovirus infection[J]. Viral Immunology, 2005, 18(1): 4-10. doi: 10.1089/vim.2005.18.4
[15]	SELIMOVIC-HAMZA S, BOUZALAS I G, VANDEVELDE M, et al. Detection of astrovirus in historical cases of European sporadic bovine encephalitis, Switzerland 1958-1976[J]. Frontiers in Veterinary Science, 2016, 3: 91. doi: 10.3389/fvets.2016.00091.
[16]	BLOMSTROM A L, WIDEN F, HAMMER A S, et al. Detection of a novel astrovirus in brain tissue of mink suffering from shaking mink syndrome by use of viral metagenomics[J]. Journal of Clinical Microbiology, 2010, 48(12): 4392-4396. doi: 10.1128/JCM.01040-10
[17]	BOROS A, ALBERT M, PANKOVICS P, et al. Outbreaks of neuroinvasive astrovirus associated with encephalomyelitis, weakness, and paralysis among weaned pigs, Hungary[J]. Emerging Infectious Diseases, 2017, 23(12): 1999-2010.
[18]	YOKOYAMA C C, LOH J, ZHAO G, et al. Adaptive immunity restricts replication of novel murine astroviruses[J]. Journal of Virology, 2012, 86(22): 12262-12270. doi: 10.1128/JVI.02018-12
[19]	ZHANG H H, QIU Q G, LIU S J, et al. Genomic characterization of a novel astrovirus identified in Amur tigers from a zoo in China[J]. Archives of Virology, 2019, 164(12): 3151-3155. doi: 10.1007/s00705-019-04435-2
[20]	YI S, NIU J, WANG H, et al. Molecular characterization of feline astrovirus in domestic cats from northeast China[J]. PLoS One, 2018, 13(10): e205441. doi: 10.1371/journal.pone.0205441.
[21]	VU D L, BOSCH A, PINTO R M, et al. Epidemiology of classic and novel human astrovirus: Gastroenteritis and beyond[J]. Viruses, 2017, 9(2): 33. doi: 10.3390/v9020033.

Cited By

Cited by

Periodical cited type(3)

1.	董超，董丽英，薛静，杨雅云，汤翠凤，阿新祥，张斐斐，杨勤忠，戴陆园. 云南三地布朗族聚集区地方稻种资源苗瘟抗性评价及抗性基因鉴定. 广东农业科学. 2025(01): 1-13 .
2.	于雅洁，曹鹏辉，宋云生，陈飞，乔中英，董明辉，朱勇良，谢裕林，袁彩勇. 江苏太湖地区粳稻稻瘟病抗性基因(Pi2、Pita、Pib)的分布及抗病效应. 江苏农业学报. 2024(05): 769-776 .
3.	范德佳，王汝琴，陈士强，何震天，张容，韩燕，王建华. 扬辐粳系列水稻新品系稻瘟病抗性基因与穗颈瘟抗性分析. 江苏农业科学. 2024(22): 128-132 .

Other cited types(0)

Get Citation

PDF

XML

Article views (1113) PDF downloads (1835) Cited by(3)

Turn off MathJax

Article Contents

Abstract

References

Identification and genetic evolution analysis of astrovirus RdRpgene of Alopexlagopus

Abstract

References

Cited by

Periodical cited type(3)

Other cited types(0)

Catalog

Export File

Citation

Format

Content