| 顺式遗传力 cis-h2 |
基因个数 Number of genes |
中位数 Median value |
平均值 Mean value |
标准误 Standard error |
| ≤0.01 | 433 | 1.000×10−6 | 1.000×10−3 | 1.02×10−4 |
| (0.01, 0.10] | 372 | 1.35×10−3 | ||
| (0.10, 0.20] | 139 | 0.139 | 0.144 | 2.49×10−3 |
| > 0.20 | 141 | 0.281 | 0.315 | 9.21×10−3 |
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4组基因的顺式遗传力
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4组基因的顺式遗传力
顺式遗传力
cis-h2基因个数
Number of genes中位数
Median value平均值
Mean value标准误
Standard error≤0.01 433 1.000×10−6 1.000×10−3 1.02×10−4 (0.01, 0.10] 372 0.043 0.048 1.35×10−3 (0.10, 0.20] 139 0.139 0.144 2.49×10−3 > 0.20 141 0.281 0.315 9.21×10−3 -
不同顺式SNP数量范围的模型预测准确性(R2)与基因顺式遗传力(cis-h2)的相关系数
模型 Model 顺式SNP数量范围 The range of cis-SNP number [0, 1564 ]( 1564 ,3097 ]( 3097 ,5384 ]> 5384 OLS 0.638 0.647 0.673 0.694 PLS 0.656 0.668 0.698 0.647 Ridge 0.649 0.621 0.639 0.626 Lasso 0.782 0.780 0.795 0.774 LassoLars 0.796 0.792 0.801 0.767 Elastic net 0.806 0.802 0.811 0.792 Kernel ridge_linear 0.651 0.613 0.654 0.625 Kernel ridge_poly 0.787 0.803 0.814 0.808 Kernel ridge_RBF 0.794 0.805 0.810 0.768 Kernel ridge_sigmoid 0.657 0.650 0.653 0.615 Bayesian ridge 0.777 0.778 0.786 0.750 SVR_linear 0.617 0.617 0.634 0.632 SVR_poly 0.742 0.770 0.788 0.774 SVR_RBF 0.795 0.801 0.814 0.772 GLM_Gaussian 0.640 0.671 0.704 0.709 KNN 0.710 0.723 0.754 0.732 Decision tree 0.618 0.644 0.680 0.631 Random forest 0.756 0.766 0.783 0.773
