牛ORPs基因家族生物信息学分析及ORP10的mRNA表达分析

    Bioinformatics analysis of ORPs gene family and mRNA expression analysis of ORP10 in cattle

    • 摘要:
      目的 本研究旨在系统解析氧固醇结合蛋白相关蛋白Oxysterol-binding protein(OSBP)-related proteins, ORPs家族在牛中的进化水平与结构特征,并探究氧固醇结合蛋白相关蛋白10(Oxysterol-binding protein-related protein 10, ORP10)在脂质代谢和脂肪细胞分化中的潜在功能。
      方法 基于牛参考基因组来鉴定ORPs家族成员,结合理化性质与染色体定位、系统发育、保守基序、结构域特征及跨物种共线性分析进行系统解析,利用STRING预测蛋白互作网络,并通过RT-qPCR检测ORP10在牛不同组织以及脂肪细胞分化过程中的表达模式。
      结果 牛基因组共鉴定出11个ORPs家族成员,多数蛋白含800~900 aa,其中ORP1氨基酸数最多,为1012 aa;家族成员在染色体上呈分散分布。系统进化分析将ORPs家族划分为3个亚群,鉴定到6个保守基序与9类典型结构域;多数成员同时含有PH结构域(Pleckstrin-homology domain, PH)与OSBP相关结构域(OSBP-related domain, ORD),ORP1特异性含有锚蛋白重复序列结构域(Ankyrin Repeat Domain, ANK)。共线性分析显示ORP8、ORP9、ORP10、ORP11在牛与近缘物种间定位高度保守,而ORP3、ORP6和ORP7呈复杂共线关系。蛋白互作预测提示ORP10与PPARG等脂质代谢相关蛋白存在显著关联;RT-qPCR结果显示ORP10在脾与瘤胃中高表达,在肌肉相关组织中表达最低,并在脂肪细胞分化早中期显著上调,第4 天达到最高峰后下降。
      结论 本研究系统揭示了牛ORPs家族的进化保守性与成员分化特征,提示ORP10可能与牛脂肪细胞分化早期的脂质代谢相关,为深入解析反刍动物脂质稳态与肌内脂肪沉积的分子机制提供了理论依据。

       

      Abstract:
      Objective The purpose of this study was to systematically analyze the evolutionary level and structural characteristics of the oxysterol-binding protein (OSBP)-related proteins (ORPs) family in cattle, and to explore the potential function of ORP10 in lipid metabolism and adipocyte differentiation.
      Method The ORPs family members were identified based on the bovine reference genome. The physical and chemical properties, chromosomal localization, phylogenetic relationship, conserved motifs, domain characteristics, and cross-species collinearity of the of the family members were systematically analyzed. STRING was used to predict the protein interaction network, and RT-qPCR was used to detect the expression pattern of ORP10 in different tissues and during adipocyte differentiation.
      Result A total of 11 ORPs family members were identified in the bovine genome. Most proteins contain 800–900 aa, with ORP1 having the largest number of amino acids (1012 aa). Family members are dispersed across the chromosomes. Phylogenetic analysis showed that the ORPs family was divided into three subgroups, and six conserved motifs and nine typical domains were identified. Most members contain both the pleckstrin homology (PH) domain and the OSBP-related domain (ORD), and ORP1 specifically contains an ankyrin (ANK) repeat domain. Colinearity analysis showed that ORP8, ORP9, ORP10, and ORP11 were highly conserved between cattle and related species, while ORP3, ORP6, and ORP7 showed complex collinearity relationships. Protein interaction prediction suggested that ORP10 was significantly associated with lipid metabolism-related proteins such as PPARG. RT-qPCR results showed that ORP10 was highly expressed in the spleen and rumen, with the lowest expression in muscle-related tissues, and was significantly up-regulated in the early and middle stages of adipocyte differentiation, reaching the peak on the 4th day and then decreasing.
      Conclusion This study systematically revealed the evolutionary conservation and member differentiation characteristics of bovine ORPs family, suggesting that ORP10 may be involved in lipid metabolism in the early stage of bovine adipocyte differentiation, which provides a theoretical basis for further analysis of the molecular mechanism of lipid homeostasis and intramuscular fat deposition in ruminants.

       

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