基于主成分分析和聚类分析的中籼稻种质资源表型多样性评价

    Phenotypic diversity evaluation of medium indica rice germplasm resources based on principal component analysis and cluster analysis

    • 摘要:
      目的 系统评估中籼稻种质资源表型性状的遗传多样性,提高中籼稻育种中亲本选择与利用的科学性和效率。
      方法 以35份中籼稻种质资源为研究对象,通过变异系数、遗传多样性指数、主成分分析、二维排序分析及逐步回归分析等统计方法,对14个主要表型性状的多样性进行系统评价。
      结果 14个表型性状的变异系数为9.31%~78.39%,多样性指数为4.82~5.12。‘碑田倒’‘早花秋’‘乌壳香’‘十月青’在二维排序图中高度重叠,可以作为育种亲本或者中间材料加以利用。‘乌壳香’在综合性状评分中排名首位。逐步回归分析确定株高、剑叶长、每穗落粒数、每穗瘪谷数、千粒质量和谷粒宽6个性状为中籼稻种质资源综合评价的关键指标。基于离差平方和法的层次聚类分析将35份中籼稻种质资源划分为3个类群,各类群间性状差异明显。
      结论 本研究中的材料表现出较高的表型遗传多样性,为优异中籼稻种质的筛选与亲本配制提供了理论依据和材料支撑,对推动中籼稻新品种的选育具有重要参考价值。

       

      Abstract:
      Objective To systematically evaluate the genetic diversity of medium indica rice germplasm resources, and enhance the scientificity and efficiency of parental selection and utilization in medium indica rice breeding.
      Method A total of 35 medium indica rice germplasm resources were analyzed, and 14 key phenotypic traits were systematically evaluated using statistical methods of coefficient of variation, genetic diversity index, principal component analysis, two-dimensional ordination analysis, and stepwise regression analysis.
      Result The coefficients of variation for the 14 traits ranged from 9.31% to 78.39%, with genetic diversity indices ranging from 4.82 to 5.12. The resources ‘Beitiandao’ ‘Zaohuaqiu’ ‘Wukexiang’ and ‘Shiyueqing’ clustered closely in two-dimensional sorting diagram, suggesting their potential as breeding parents or intermediate materials. ‘Wukexiang’ ranked the first in overall trait performance. Stepwise regression analysis identified the six key traits, including plant height, flag leaf length, falling grains per panicle, shriveled grains per panicle, 1000-grain weight, and grain width, as the critical indicators for comprehensively evaluating medium indica rice germplasm. Hierarchical cluster analysis based on the square sum of deviations method grouped the 35 accessions into three distinct clusters with obvious differences in trait performance among clusters.
      Conclusion The studied medium indica rice germplasm exhibits a high level of phenotypic genetic diversity. These findings provide a theoretical basis and valuable materials for the identification of elite resources and rational parental combinations of new medium indica rice, and offer an important support for the development of new medium indica rice cultivars.

       

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