单增李斯特菌、格氏李斯特菌或威尔斯李斯特菌侵染果蝇S2细胞后的转录分析

    Transcriptome analysis of Drosophila S2 cells after the infection of Listeria monocytogenes, Listeria grayi or Listeria welshimeri

    • 摘要:
      目的 利用果蝇作为宿主比较单增李斯特菌Listeria monocytogenes、格氏李斯特菌L. grayi以及威尔斯李斯特菌L. welshimeri侵染后触发果蝇S2细胞基因表达模式的异同,为探究宿主的先天免疫防御机制以及不同种李斯特菌的致病差异机制提供一定的研究基础。
      方法 单增李斯特菌、格氏李斯特菌以及威尔斯李斯特菌分别侵染果蝇S2细胞3h后,利用转录组测序技术检测果蝇S2细胞中的mRNA表达谱,并利用生物信息学方法筛选出差异表达基因,然后对这些基因进行GO注释及KEGG分析,最后采用qPCR技术验证5个Toll和Imd通路相关的抗菌肽基因的转录水平。
      结果 单增李斯特菌、格氏李斯特菌和威尔斯李斯特菌侵染3h后果蝇S2细胞中共有18个差异基因,特有的差异基因分别为104、28和33个。3种李斯特菌侵染组的共有差异基因被注释到代谢过程、细胞过程、细胞、细胞器、膜、催化活性、对刺激反应、免疫系统过程和转运体活动等共有的GO条目;此外,单增李斯特菌侵染组特有的差异基因被注释到生物黏附、参与化学突触传递的突触前过程、生物过程的负调节、信号传导、核酸结合转录因子活性、信号转导器活性和营养物储存器活性等特有GO条目;格氏李斯特菌侵染组特有的基因被注释到多个生物体过程、细胞外区域等特有GO条目;威尔斯李斯特菌侵染组特有的基因则被注释到发育过程及膜包裹腔等特有GO条目。qRT-PCR 验证5个Toll和Imd通路相关的抗菌肽基因的转录水平,定量结果与测序结果基本吻合。
      结论 3种不同李斯特菌侵染后触发S2细胞的转录表达模式具有一定的相似性,但同时也存在不同之处,这些差异存在的信号通路可能与3种李斯特菌在S2细胞中的致病力强弱存在相关性。

       

      Abstract:
      Objective Using Drosophila as a host to compare the gene expression patterns in S2 cells after infection with Listeria monocytogenes, L. grayi, and L. welshimeri, and provide a research basis for exploring the innate immune defense mechanisms of the host and the differential pathogenic mechanisms of different Listeria strains.
      Method After infection of L. monocytogenes, L. grayi or L. welshimeri for 3 h, the mRNA expression profiles in Drosophila S2 cells were detected by using transcriptome sequencing technology. Analysis of differentially expressed genes (DEGs) was performed using bioinformatics tools, including GO annotation and KEGG analysis. Finally, the mRNA levels of five antimicrobial peptide genes associated with the Toll and Imd signaling pathway were validated using qPCR technology.
      Result After infection of L. monocytogenes, L. gray or L. welshimeri, there were 18 DEGs in common, as well as 104, 28, and 33 unique DEGs respectively in the Drosophila S2 cells. The DEGs commonly existed in three Listeria infected groups were annotated in GO terms including metabolic process, cellular process, cell, organelle, membrane, catalytic activity, response to stimulus, immune system process, transporter activity, and etc. The unique DEGs existed in L. monocytogenes infected group were annotated in GO terms such as biological adhesion, presynaptic process involved in chemical synaptic transmission, negative regulation of biological process, signaling, nucleic acid binding transcription factor activity, signal transducer activity, and nutrient reservoir activity. The unique DEGs in the L. grayi infected group were annotated in GO terms such as multi-organism process and extracellular regions, while the unique DEGs in the L. welshimeri infection group were annotated in GO terms such as developmental processes and membrane-enclosed lumen. The quantitative results of qRT-PCR validation of five antimicrobial peptide genes related to Toll and Imd signaling pathway were consistent with the transcriptomic results.
      Conclusion The expression patterns in S2 cells affected by the infection of these three Listeria species exhibited some similarities but also differences. The variation of the signaling pathways may be related to the virulence of these Listeria species in S2 cells.

       

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